Map infrastructure for high-volume scientific data
Build genomics and single-cell workflows with research-grade privacy, provenance, and interoperability.
Three assays, one map
Step through a multi-assay build: single-cell transcriptomes, chromatin accessibility and spatial imaging embedded into one space, laid out as one map, computed on in place, and shared with collaborating groups under the space’s own access controls.
Map millions of cells
Embed single-cell, molecular, and imaging data to see structure that a static plot hides. Laying out your matrices in Mantis puts them in front of clustering, filtering, and annotation workflows in one place.
- ThroughputHandle very large record counts
- ProvenanceTrace every cluster back to its source rows
- Field controlsType fields as semantic, categoric, numeric, or date
Open up multi-omic workflows
Move between assays in real time and use shared embeddings to enable faster analysis for perturbation screens, atlas building, and other multi-omic workflows without sacrificing privacy. Mantis spaces let labs run private environments for their sensitive datasets without losing access to public reference maps.
- Real-timeMove between maps and assays in real time
- PrivacyKeep participant-level records private
- EfficiencyGet faster analysis and easier reuse with shared embeddings
Work across labs and groups
Share maps and findings with other groups while meeting your data governance requirements. Mantis enables this with built-in access controls and the ability to run compute on your own cluster or on hosted workers.
- InteroperabilityAccess shared reference maps and the Mantis integrations
- GovernanceUse built-in controls to enforce data policy
- Predictable computeRun embedding jobs on your own hardware
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Single-cell data
Mantis inspects an .h5ad file, proposes a set of maps over one shared cell dataset, and materialises the ones you enable.
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Mantis Coding
A Python notebook wired into the workspace, with the space’s points preloaded and cells that can drive the UI.
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Sharing and visibility
Who can open a space, how per-user access works, and how vignette links are controlled.
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